YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1RL_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFRGLVPE LENSLWSSPT TSCMSKMCWW LLWGILHTCP TQASVLLAQQ SPQQLTSPGY  60
   61 PEPYLKGQES HTDIEAPEGF AVRLTFQDFD LEPSPDCEGD SVTISTGGTD ATRLCGRQGS 120
  121 PLGNPPGHRE FVSSGRSLRL TFQAHSSSKS KITHLHKGFL ALYQAVAVNQ PNGDTEAVTT 180
  181 PGAPKIQNHC QDPYYKADQT GTLSCPSSWK WKDRQDGGEV PECVPVCGRP VVPLAENPNT 240
  241 FGSSRAKLGN FPWQAFTSIY GRGGGALLGD RWILTAAHTI YPKDSIYLRR NQNVEVFLGH 300
  301 TDIDELLKLG NHPVRRVVVH PDYRQHESHN FNGDIALLEL EQRVPLGPNL LPVCLPDNET 360
  361 LYHSGLWGYV SGFGVEMGWL TTKLKYSKLP VAPREACEAW LHQRQRTEVF SDNMFCVGEE 420
  421 MQVNSVCQGD SGSVYVVWDD LALRWVATGI VSWGIGCGKG YGFYTKVLSY MDWIKRVIEG 480
  481 KD

Type	Start	End	Confidence
Cytoplasmic	1	27	0.63
Transmembrane Helix	28	48	0.60
Non-Cytoplasmic	49	482	0.97