YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOTO_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPAPSGTQ VQPGSLRPCP GAVSPVVPRR LARGRLESSF SVEAILARPK TRELAATSLP  60
   61 LSTCTSLNLL GAVSQYGVLP WVCSTGSWLP AYLSVGVYPL CSMSCVPGLN VTHHQQGLRL 120
  121 TGSELPYCLG PLKWAPTVDL RDHGTERHTK RVRTTFNLQQ LQELEKVFAK QHNLVGKERA 180
  181 QLAARLHLTE NQVRIWFQNR RVKYQKQQKL KLPSSSVMEE PSSSSDGNIQ SEDAELGIGS 240
  241

Type	Start	End	Confidence
Cytoplasmic	1	54	0.66
Transmembrane Helix	55	74	0.58
Non-Cytoplasmic	75	90	0.76
Transmembrane Helix	91	111	0.59
Cytoplasmic	112	240	0.62