YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39AC_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.95
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	367	0.99
Transmembrane Helix	368	390	0.92
Cytoplasmic	391	398	0.83
Transmembrane Helix	399	421	0.89
Non-Cytoplasmic	422	443	0.93
Transmembrane Helix	444	465	0.87
Cytoplasmic	466	534	0.95
Transmembrane Helix	535	552	0.58
Non-Cytoplasmic	553	596	0.47
Transmembrane Helix	597	619	0.88
Cytoplasmic	620	629	0.47
Transmembrane Helix	630	649	0.93
Non-Cytoplasmic	650	661	0.47
Transmembrane Helix	662	683	0.92
Cytoplasmic	684	689	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFWTNLSVW MILLSHSLSL VSSTETGKTL TQNNSRAGSQ GLLEVLRVLS AGDHWSLNHP  60
   61 QSLIKILLER TGCPQRTDWT QGDCKLCLEA DALLLTAGGN LEDELREEVV QRVSLLLLYY 120
  121 IIHQEEICSS KLNMSNREYE FYLHSLLGLR QDEDSYFLSE KETDDILAFT RKYFGTSSSQ 180
  181 CMETKILQRE SGIQGSNGAD EKTLPQLAAT IIALSLQGVC LGRKALPSPD DFTEYIFSFL 240
  241 NSTNTLHLSE IEQLLNMLTT RRTCAKEDKY LHQYQRKQNT EEHSLRDPKT STAMDKESDD 300
  301 HSPSWDQACF SARQLVEIFL QNHSSLSISK EDFKQLSPGI IQQLLSCSCQ MPKDQQAKPP 360
  361 PTTLEKYGYS TVAVTLLTLG SMLGTALVLF HSCEENYSLI LQLFVGLAVG TLSGDALLHL 420
  421 IPQVLGLHKQ EAEFGHFHES QSPIWKLLGL LGGIHGFFLI EKCFILLVSP NTKGLPLVNE 480
  481 HVGHTHHLGL NPELNDQSSG GKSISTIQLK GPEDSQTTVL PIGNVPASNR NGKTISLLAI 540
  541 MILVGDSLHN FADGLVIGTA FSSSLESGVT TTIAILCHEI PHEMGDFAVL LSSGLSVRTA 600
  601 ILMNFLSALT AFAGLYIGLS VSADPRVQDW ILTVTAGMFL YLSLVGMLPE MTHVQTQRPW 660
  661 MTFLLQNVGL VLGWFSLLLL AVYEQNIKI