YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38928
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNPELLPLI SRKSPVKYYH NENISFFEKM RRQKSKKEYY SRLEKLNQLY EEDDKLLEGI  60
   61 TQPEEHEQST DRWLANISIA LNLTLLFTNL LASILSGSLS IVSTFVDSLM DVTSGLIIGI 120
  121 CLKLIRNTNM FNYPRGRNRL ELVGVIICSI LMGISNTLLV MESIRSILEG DINPVMNITT 180
  181 ISIMLGGSAV KIILCLICYK RGSSSSIVLA MDMRNDIATS IVAIICATVG DRYWPYADPL 240
  241 GAILVCGVIA TSWYGHAIGH VPHLVGRRAE SEKLSRILKI VIEHDERIKY VDHVMVYHTT 300
  301 LEALAEVHIV MDENLPLKVT HDIAQKLEQK LMMLVFVERC FVHCDYECDG DK

Type	Start	End	Confidence
Cytoplasmic	1	77	0.97
Transmembrane Helix	78	99	0.84
Non-Cytoplasmic	100	107	0.55
Transmembrane Helix	108	125	0.91
Cytoplasmic	126	141	0.83
Transmembrane Helix	142	161	0.94
Non-Cytoplasmic	162	177	0.83
Transmembrane Helix	178	199	0.91
Cytoplasmic	200	214	0.87
Transmembrane Helix	215	234	0.85
Non-Cytoplasmic	235	239	0.77
Transmembrane Helix	240	259	0.91
Cytoplasmic	260	352	0.95