YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38454
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGDEYGSLV VVATVATLVI VAASWILRHS PIIINAVFAV VISIAIFAFS SLVNRSIPET  60
   61 FELLFRMVIG PQDSWNRVYM VAFWLANVAI SVIFCAYVSS IGRSSTVHRK FFHLTVSLIY 120
  121 ISGILLDPLF SWLCAWLWLC IFTLVELLRY LNVPPWGGVL NEHLLIFKDA QDSELLLTPI 180
  181 YLLPTLAIFA GVAAVGVGDS MAAIVGSKFG VTKWKGSKKS LEGSIAMLFS MLVFLLTTNL 240
  241 FIKDSSSTIS IIIASLVATL AEAFINSMDN FILPLVTYLI L

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	32	0.79
Transmembrane Helix	33	53	0.92
Non-Cytoplasmic	54	79	0.82
Transmembrane Helix	80	101	0.92
Cytoplasmic	102	115	0.74
Transmembrane Helix	116	140	0.78
Non-Cytoplasmic	141	184	0.76
Transmembrane Helix	185	206	0.87
Cytoplasmic	207	220	0.77
Transmembrane Helix	221	242	0.88
Non-Cytoplasmic	243	248	0.72
Transmembrane Helix	249	268	0.81
Cytoplasmic	269	281	0.64