YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sru-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLNNVSIQ GDPRYINYKF EFFTFPVFLA LVPFTYVIPT TVIVSKICIC YFKNPSGNRN  60
   61 GTMNPHVFLV IAISQITSIF YMISDYLTTR IPFTGAITSW CASQQPNHLL KVLFFFSTYF 120
  121 TYTGWIFPFL LTTLRLVSLY YPFNQDELCA RITQLSIPFI YIWPLFFTFT LFPALGFCRQ 180
  181 ILGPYQFGAI YFWFSGNLFD IKLIKGLIGN LLFWFILCTT STLMLFIKLE KMKNQRNSAL 240
  241 VQKAELSLSL TTLSMLFSFI FHFVGGLIFI INPYYTAYFI ALRPYGNDIE FVVVPWIFYS 300
  301 THPIFKKQSV VADGASRIGS VQTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.82
Transmembrane Helix	25	49	0.78
Cytoplasmic	50	64	0.78
Transmembrane Helix	65	84	0.92
Non-Cytoplasmic	85	117	0.82
Transmembrane Helix	118	139	0.81
Cytoplasmic	140	158	0.81
Transmembrane Helix	159	183	0.85
Non-Cytoplasmic	184	203	0.88
Transmembrane Helix	204	227	0.90
Cytoplasmic	228	247	0.90
Transmembrane Helix	248	271	0.89
Non-Cytoplasmic	272	325	0.63