YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38564
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNFQNFDN VNSTNEQSGA FGGNIGDRNI LVGGSVGATS SAAPSGGVFD DSQSTTSTRK  60
   61 GNFFSFEYYQ QFFDVETDQV IKRLLNSVIP THRNYIQDFL QPIPDLWGPF WVSVTLVFAI 120
  121 GIFGNLAQFI ENDGAKGTYG SDFRMVTSAS TLIFLYVVIV PLLLYGLLWN RRSELLHPYV 180
  181 DLVCLYGYSL AIFIPVSVLW IVDIGWFRWA LIFASVGLSG TVLARAIWPA VQNDNNKMIA 240
  241 FGTVISVVVL HFLLAFTFKV YFFDSMHIVV EFYFDAMHPA AGSRAPLSPA APAALLIDTT 300
  301 TVIMIQNATV PAPEAPNQKE AATNTETTTV VAVKSDDKKR ESAEVTKPDD AEPSAPENAT 360
  361 SSPTTVPQVR KDEKIDQKPT ETTEKSTEKL PAAEISENST EAAAAATNST EKNQ

Type	Start	End	Confidence
Cytoplasmic	1	106	0.94
Transmembrane Helix	107	129	0.89
Non-Cytoplasmic	130	146	0.88
Transmembrane Helix	147	169	0.91
Cytoplasmic	170	178	0.86
Transmembrane Helix	179	201	0.88
Non-Cytoplasmic	202	208	0.69
Transmembrane Helix	209	228	0.95
Cytoplasmic	229	237	0.85
Transmembrane Helix	238	258	0.93
Non-Cytoplasmic	259	289	0.77
Transmembrane Helix	290	305	0.43
Cytoplasmic	306	414	0.55