YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sre-33
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIINSNSSTI FSSIWLPVFF YVEPLDQQVI ISILELMIYL VCIHLVNVSL HVALKIRLFH  60
   61 RNLYILALPM FGMWYELIIG KFITIAYRLK LLGLDFELGE HTAIWTNDPG KVLLVASLNG 120
  121 LELLIFGGFL QWHYMYSWIF GVLTVAVERV IASVLIENYE SNTQNLMPAI LLIISQFLSI 180
  181 SMAFGLLFQK VGPLSAHFPW MISCPISVAA YVFVKKVNES FRREIKNPGR KRIFTLSQQF 240
  241 QVKENLRVLH LGTRLVFAVL SFIGICGCGI AALHYKIVPS YYCHLIENVL FLNPFLIGLT 300
  301 AMLSIPQWKE QFMKSFLTVR LFRNRRKPVH IVVEIEECAK KKNDVETNLY FKQLANSWI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.53
Transmembrane Helix	7	22	0.49
Non-Cytoplasmic	23	28	0.65
Transmembrane Helix	29	51	0.83
Cytoplasmic	52	62	0.71
Transmembrane Helix	63	85	0.84
Non-Cytoplasmic	86	133	0.84
Transmembrane Helix	134	152	0.87
Cytoplasmic	153	165	0.80
Transmembrane Helix	166	188	0.91
Non-Cytoplasmic	189	195	0.83
Transmembrane Helix	196	214	0.96
Cytoplasmic	215	254	0.94
Transmembrane Helix	255	275	0.95
Non-Cytoplasmic	276	283	0.82
Transmembrane Helix	284	305	0.87
Cytoplasmic	306	359	0.96