YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSCNLRVT QEIISNNGTN MTSTEVEAIS INVVKSLGLA VGLIQIIMGL FKANYLISYL  60
   61 SDQIILGFTT GAAVHVLTAQ LNKILGVALP RHSGIGKLFF IYQDLITAII GEKVNVITFG 120
  121 ASVVAIVILY ISKYILTPRF CAKTLVPIPF DLFLIVIGTI IADWFQVEER WGVKVVGDIP 180
  181 TGFPNPALPD LFMFRHVIGD ALAIAIVSVV VTVSMGKVIA KKHNYEIDVR QEFFALGIVA 240
  241 STCSMFPCWP ATTALARTLI NDNAGTKTQV RFIFKFNFRN NNAKLEKLKN

Type	Start	End	Confidence
Cytoplasmic	1	30	0.75
Transmembrane Helix	31	51	0.74
Non-Cytoplasmic	52	58	0.41
Transmembrane Helix	59	81	0.65
Cytoplasmic	82	92	0.32
Transmembrane Helix	93	110	0.42
Non-Cytoplasmic	111	115	0.60
Transmembrane Helix	116	136	0.86
Cytoplasmic	137	143	0.81
Transmembrane Helix	144	165	0.88
Non-Cytoplasmic	166	195	0.91
Transmembrane Helix	196	216	0.89
Cytoplasmic	217	232	0.86
Transmembrane Helix	233	253	0.76
Non-Cytoplasmic	254	290	0.77