YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-37
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTQAYNSS QCSDAAEAVR GALYLVPSFF NTCSAAGTFF VFVYIYIRFS FRIYYHINAK  60
   61 ILIFLNMMSF LSISLATLIN YGTLFINALL ATDDCDFLFL TPSCSFIRRM FLFSIMLTTL 120
  121 THASLTLERA YATYQLGAYE KTGPRLGLVL GGVSLVGAVV MVTATTSPEN SGEMLTNCFA 180
  181 FSSSPSIGDN VYNMFRLQLA LEIGTWVMYF ILVTYHKMKV RQQVEGHLAD RFQAIENMIV 240
  241 LRQLRPLILI SSAIIGVYII FSSTGRFLRS VLSLTHYKQF ASIIFVMPHN AFISMTLYYY 300
  301 LFKWGFQEKK KRMEDTLTSP LTERKTHMQQ LQEQWNDGFR IKELESQSPR TNGPPSKYAS 360
  361 V

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.88
Transmembrane Helix	28	47	0.92
Cytoplasmic	48	60	0.81
Transmembrane Helix	61	84	0.85
Non-Cytoplasmic	85	105	0.88
Transmembrane Helix	106	126	0.89
Cytoplasmic	127	145	0.89
Transmembrane Helix	146	166	0.95
Non-Cytoplasmic	167	193	0.96
Transmembrane Helix	194	215	0.87
Cytoplasmic	216	246	0.89
Transmembrane Helix	247	265	0.91
Non-Cytoplasmic	266	279	0.87
Transmembrane Helix	280	302	0.92
Cytoplasmic	303	361	0.98