YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dop-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLWRVAAG VFLPLVPTMA VFGNVLVIMS VFRERSLQTV TNMLIVSLAV SDFMVAIGVM  60
   61 SFGVYYEWND FKWGLGSFFC HVYQALDVAC STASILNLLA ISLDRYIAIG HPISYAQYGA 120
  121 RGGRAMISIT IVWGVSVAVA LPLLLGVNPM EENDLQECEL ANPYFNMISS IFSFFIPCIA 180
  181 MIILYTIIFR RLRQRERARS LRQAQRSEND KISSALLGGA QIARQMGKHF KNRTDQILLE 240
  241 ISFQV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	42	0.82
Transmembrane Helix	43	64	0.93
Non-Cytoplasmic	65	82	0.87
Transmembrane Helix	83	103	0.90
Cytoplasmic	104	124	0.85
Transmembrane Helix	125	146	0.91
Non-Cytoplasmic	147	167	0.94
Transmembrane Helix	168	189	0.93
Cytoplasmic	190	245	0.98