YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dop-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVLWRVAAG VFLPLVPTMA VFGNVLVIMS VFRERSLQTV TNMLIVSLAV SDFMVAIGVM  60
   61 SFGVYYEWND FKWGLGSFFC HVYQALDVAC STASILNLLA ISLDRYIAIG HPISYAQYGA 120
  121 RGGRAMISIT IVWGVSVAVA LPLLLGVNPM EENDECELAN PYFNMISSIF SFFIPCIAMI 180
  181 ILYTIIFRRL RQRERARSLR QAQRSENDKI SSALLGGAQI ARQMGKHFKN RTDQILLEIS 240
  241 FQTSSFPTMS ESSEDASTIS PMINSFNNFL PKKTPYPSTS IPAIPECGSM PNLTIIERPE 300
  301 AEKEKEISIM DLRDTVEMLD DKYSSAILTS FQTSRSFGEE LEEILPFIDG SNSVKHSREQ 360
  361 LHTTRSNTST TRLLDVKPEL RSISVPSIQD EKKLSQKSND LPFSHQNGTH KQKLLPNPGI 420
  421 LMKSKSTTLL KTNGYMDTDS LNRNSHKKSL ADLLANDEFS FSDSMRVYKN RLFKSLSRAT 480
  481 SGWNKPRPSR HMVKKATKQM RREHKATVTL AVVLAVFLFC WLPFFVLHLS NSICLIIDEN 540
  541 SACVGFLPLY LATWLGYLNS SLNPLIYTVF DQRFRNAFRN ILSCGIFKKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	42	0.82
Transmembrane Helix	43	64	0.93
Non-Cytoplasmic	65	82	0.87
Transmembrane Helix	83	103	0.90
Cytoplasmic	104	124	0.84
Transmembrane Helix	125	145	0.92
Non-Cytoplasmic	146	165	0.91
Transmembrane Helix	166	187	0.93
Cytoplasmic	188	505	0.99
Transmembrane Helix	506	527	0.93
Non-Cytoplasmic	528	549	0.79
Transmembrane Helix	550	570	0.75
Cytoplasmic	571	590	0.89