YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37848
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLQYLIFL FSSLLFAGLA LSSAQVAVNG PFMGRYYVAA KPVLAPGVAP VAAPVLAAAP  60
   61 TVLAAPAPLL APPAPLLAPP APVLAAAPAF AAPAPVFAAP PAPVLAAPAP FLAPPVPPVA 120
  121 PIVSAFAPRP VLAAPAFAPA PILAPRPVLA APAIPAFAPA PLLAPRPVLA APAIPAFAPA 180
  181 PIIAPRPVLA APAIPAFAPA VPAAIPAYAP FARSAFLIGG NKAKTVKA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	28	0.74
Non-Cytoplasmic	29	42	0.80
Transmembrane Helix	43	70	0.73
Cytoplasmic	71	75	0.63
Transmembrane Helix	76	99	0.73
Non-Cytoplasmic	100	118	0.54
Transmembrane Helix	119	144	0.55
Cytoplasmic	145	147	0.41
Transmembrane Helix	148	182	0.55
Non-Cytoplasmic	183	188	0.59
Transmembrane Helix	189	212	0.75
Cytoplasmic	213	228	0.72