YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-17
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIDTGFYSK TITPTYDSDA IDRLRYYFTV FLLTSSAFFI MAKQYVGQSI QCWAPKQFKG  60
   61 GWEEYAESYC LIENTYYVHM NNSNLPGPAI RENKELKYYQ WVPFILFGLA VVIYIPRVIW 120
  121 NALQSLIGIN ISIVTSNLRK VAKSGFTSEN PDIEKKKKEM QCKKKATSRQ VDGEFWGSRL 180
  181 TTCILATKFL ATILIFISMG FLDYFMGLGP MYGWTITKDI LQGRQWQESG SFPRVTFCDF 240
  241 QVRELGYVNN WSLQCVLMVN IRNFNS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.72
Transmembrane Helix	26	46	0.58
Non-Cytoplasmic	47	97	0.41
Transmembrane Helix	98	120	0.82
Cytoplasmic	121	183	0.48
Transmembrane Helix	184	207	0.83
Non-Cytoplasmic	208	266	0.52