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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-7
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEGILLLL LLPLLVYGDL LSIPSTTFKI PRNAQEGDLI IGPEFIRASE DIDEALNLEL  60
   61 EGTNPSPIAI NGSIIDAGQP VKFILVNKNA FDSGKSKVKL QAIGVISGKV QEETINFEVE 120
  121 ASSDLPSIPE ISNFVVKSDF QEKETAIVRV SSPIPPNSEL DILGSYAQRV TATFEDDKII 180
  181 LNTVPCHADT PCEVTFPFVV ILVLRNGENH VEALLTFQEE KKSSLKMAQK LYQTTIEEHT 240
  241 GEQDHLVKIS TKGGSSEVLY SLRDASGLFS IHPKEGILSI LHPEFLSISS FGDTVNLTVV 300
  301 ATDGDKTADA MINVKIVPEV EKNVVFGFEK ESYDITAENI NSILGNIKAK SASPVVYRIT 360
  361 EGRIDLYKVE PNGDLVYTGK MVKGDREDDV TVVVQQGGLK MASTKVHINL KGIGSNPVST 420
  421 SDELEKIELI SSEDPNGVVV TLIQFQDEDK DAKLTYELTM ENGVDENGNM IPLQEQLFEI 480
  481 KSEEKVAHLV VSGNLKTSKI TTILLKITAR DSTHPKEPSV TVTRLIVIQR EKSEEEPMGL 540
  541 NLIPLPTEIL VPVDSAVGSF IYKVTVLPMK ENLQYSIEPE HLFQILDDGS IVTQKELTVE 600
  601 AEQLKIHVEV SDGSEKKSTE TTLTLKKTLH PHFTESRYDV TLPRQTPKDS VITVVSAVGG 660
  661 NGEPVNQFVL KKGGHSKHFK IDEKGALRLA DEQERFDDLD DEMDLLVALA ENPTISVPVH 720
  721 ISLKKNRNPR IDLVENQIFA TVYDNLPINS YVGKVEVASK ELVKFEMTSD EKGMSSLFGI 780
  781 EEDGTIRSKD WLAGSEGMHK FSVLASNIDQ AGVRSANATV VIDVIKSNEC SPKFKRDENL 840
  841 IFYVRENTPI DTVIGKVSAD VLPGKCALEY SIIGPNSEIL SINSANGELK TSKEFDFEKQ 900
  901 KSYLLTLKLV AGKYNSVESG AELKILDVDD HEVKFELQEQ TVEIPEDAPL NTVVATVKAT 960
  961 EGDESQEVFY HLKAGSPPQF SLNSKTGEVM VEQALDREAL DNFEIEIGAS NSVDLIGTAA1020
 1021 MKLLVKVKDV NDNGPTFDRP QYFTVVSKDT VVGAELLELN AYDPDLSDQE KKLEYTVTAS1080
 1081 SFEYRGMSRN VEDVLDIRGG ENPKIYLSKP LTDYVGGVFN VQLQVRDTVD GTIGKSALRV1140
 1141 YVHDSSDLLS LELPYSPSTV SQGVIQEFTE NLSNSTGLTA IPKSVYYKAP HGIMSTNSID1200
 1201 LQVIFFNKSM SEIVPAERIL AMQDMRQDKH QPILRKPASP YLMTSEDPRS DTLIQPELFF1260
 1261 MVLGFLVLLA ITLALCGMMA CFARSRFLRE KRIMENEMAI KDAIQFPSNR SPALVSFKHF1320
 1321 APPSAEMYRN HEEHMYRSPN LNEKIGSYAV QQATITVAEH EEKI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle