YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-47
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRYHSILLL AILYFFEYGL AYKILVFSPA TSKSHLISNG RIADELAKAG HNVTLLEIDF  60
   61 LGIVDSTKSA KLVKKTIVRV PKKMQGFKNV IQSFSEGVME DEGLFELLKG NIAYQTVYND 120
  121 LCEEFLENEV MFNKLKDENF DAFFAEQLNI CGFGYAKALG IQRKFLISSC PFFSHVYDYT 180
  181 SHPAPYASVP FISDMSPEPT YLERTNNLLR GITINTFFYF SHNRLTSIFR KKFGDDFPAI 240
  241 TEIVRNVDII FLATDEIIDF SSPTLPNLVH VGGLGVDDDT TEMGPVFEAE MKKGDKGVIY 300
  301 FSLGTIANTS TIDKKVMESF LEIVKKFPDY HFLIRADKND KNTKDKATEI SNVFVSDWLP 360
  361 QPAILHHPRL RTFITHAGYN GLMEAALAGV PLITIPFMFD QNLNSRAIEK KGWGIRRDKK 420
  421 QFLTEPNAIE EAIREMLTNP SYTKQAHRVR DLMRNKPMGA RDRFIKTTEW VIQNGGVHEL 480
  481 LTEGRDLSII KYYNLDIIVP CFFVAFYFII FPFFKLFGGF YYYSCFGHIE SKYKKD

Type	Start	End	Confidence
Signal Peptide	1	21	0.78
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	376	0.95
Transmembrane Helix	377	399	0.60
Cytoplasmic	400	491	0.67
Transmembrane Helix	492	514	0.76
Non-Cytoplasmic	515	536	0.67