YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-5
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPNIILILL IRYCSCGAGS RVYEKYGKQV QLSPATTSSY REWYDSNREH STRNNTNVDD  60
   61 FQTQLKKSLE NTTAAYNATF MQELIEERQR YLEKLNEGQF INDQRRLVEE LLDPNYYEKT 120
  121 VHPKRDYTRP TRVNLSMSLY QILDVDEHMQ SIEVNVWMVQ HWYDEFLDWN PVDYGMINRT 180
  181 IVPYHQIWIP DTYLYNSEEL EQKKTESLMN AQLETGHWNQ KKDGAKVQLM FPAIYKLSCR 240
  241 MDVRWFPYDR QNYKTSFKPM KLLQQTIDYW PLSSTVNLGN MARNDEWEVI SFEFVRVEET 300
  301 FKCCTAPWVM LYAHLVIRRK PLYYMINLVV PTSIITIVAV TGFFTPTSSS SERDEKLYLG 360
  361 INTLLTMSVM MLMVCNQMPS TSTYVPLMSW YYIGIIMVIV VGTFLATGVL AIHGQKHYNK 420
  421 PISDRIRKLI YNPVVEFFIL SPPTSLIDLW TEFGVISEQR HSTHLDPLLL QHMDPISHTT 480
  481 RADPQHFFGS ISSQMCDLQS TYSYTARLAT ITRQYTQHAK MKALRKNQYR MSMDTSQARG 540
  541 VKKQKMQRRC SLEWEFLANV LDRILLTIFC GFTFAVFIIL IGFDSFFTFH TDSPPKTM

Type	Start	End	Confidence
Signal Peptide	1	16	0.77
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	322	0.96
Transmembrane Helix	323	345	0.93
Cytoplasmic	346	356	0.88
Transmembrane Helix	357	378	0.88
Non-Cytoplasmic	379	389	0.82
Transmembrane Helix	390	412	0.93
Cytoplasmic	413	563	0.87
Transmembrane Helix	564	583	0.94
Non-Cytoplasmic	584	598	0.75