YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37922
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYISVNGSEA RFIALFYVKA YQSQCPFEWL YTIFQILEIL LVVVAGVLNM YTVYMALHTQ  60
   61 SFHINITLIY TVFMFHWFEL IISRFFLFPY QEAIFPLQIQ NSNSLIVNTF DDIIVPISSP 120
  121 QTNLSLMLGA GLRGRWMLLV CFAIPCIAVE RSFATLLVRD YEQKSRVYIS ISLIIFSELF 180
  181 ATIAVYAVVF QIVGVLFLAL TATILQLCSF GVSSGNLTKK NSENCLNFQI IQAIKQKTKY 240
  241 FEKKCERNVN FYTLSVKFQL TENVQSFKLL HVLVIEVAIM ITTVSITILL GDLGWISPDH 300
  301 TVFVFYVMEK FIHINPLFIC SAVFYMKPRW LKSLLQLVPG RLARRTHAVE FSETEKIRES 360
  361 EADAHFEQLR KLW

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.81
Transmembrane Helix	33	54	0.89
Cytoplasmic	55	65	0.62
Transmembrane Helix	66	87	0.84
Non-Cytoplasmic	88	133	0.85
Transmembrane Helix	134	154	0.85
Cytoplasmic	155	166	0.83
Transmembrane Helix	167	188	0.90
Non-Cytoplasmic	189	193	0.64
Transmembrane Helix	194	213	0.90
Cytoplasmic	214	268	0.96
Transmembrane Helix	269	291	0.89
Non-Cytoplasmic	292	310	0.76
Transmembrane Helix	311	326	0.94
Cytoplasmic	327	373	0.94