YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39021
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	84	0.80
Transmembrane Helix	85	107	0.84
Non-Cytoplasmic	108	125	0.44
Transmembrane Helix	126	148	0.85
Cytoplasmic	149	245	0.74
Transmembrane Helix	246	265	0.91
Non-Cytoplasmic	266	273	0.62
Transmembrane Helix	274	295	0.94
Cytoplasmic	296	359	0.71
Transmembrane Helix	360	383	0.70
Non-Cytoplasmic	384	426	0.52
Transmembrane Helix	427	449	0.76
Cytoplasmic	450	469	0.75
Transmembrane Helix	470	491	0.92
Non-Cytoplasmic	492	509	0.93
Transmembrane Helix	510	531	0.87
Cytoplasmic	532	556	0.89
Transmembrane Helix	557	579	0.93
Non-Cytoplasmic	580	584	0.85
Transmembrane Helix	585	605	0.93
Cytoplasmic	606	650	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTESSSEN PDGIEKFDND EELAISPTGN PNLNPSKIEA EELEQEIGSR NISRPSTYRQ  60
   61 LSLLLSCVTL LKNNMVFIEC FFNHGGVYFF VPYFIILFVL GVPMAIFELS LAQFSSIPMN 120
  121 GMFTRMAPML GGIPWLILCL RIIYTVYIAF DPRFLLYAYK SFVTVITGNM NWIHCDDYKG 180
  181 VRCFDPTWSC KINEFRLNGE CVKDVHIRKL AQQQDYGLLT YFGLREYRLI SIIPSQIYKE 240
  241 INGLDIMDNI LAALVFLLIA GFITYKGHRF FASLAGFFVF LPILGMIPAV ILVYYDVGSR 300
  301 KKHFFNQILK NNDITKIFEL SAWLNAARVT VKTVYIADGT LMALGSRADF RHNFIKDAVL 360
  361 LAASGATYRL LLCFGILPIL YVANDILYPF AKTVYARGDL VQFHAIELFF SALPSYAIPG 420
  421 ISPTVTFFVY AMLYGTINFA FVAYQVITFE MLINALHHLF PRLLYLKQKS VRICIIMATV 480
  481 TLLLFLYILS LPYKQLAVGY QKELAIDDYV VGLVSTTVFI QLISVSIVYG YKRLLINFLT 540
  541 MLKHHPVTYK LVEKCRVFLY VMWAFFLPIS CLVSICSIIV KKYQIYHWPL VLYAAISALP 600
  601 LIYLARKLTM YIMRKEFVSG LSQTHRWQPA NEGHAREVEH DERASGVSNN