YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.90
Transmembrane Helix	37	52	0.61
Non-Cytoplasmic	53	63	0.52
Transmembrane Helix	64	98	0.68
Cytoplasmic	99	99	0.22
Transmembrane Helix	100	128	0.58
Non-Cytoplasmic	129	195	0.68
Transmembrane Helix	196	216	0.92
Cytoplasmic	217	228	0.51
Transmembrane Helix	229	252	0.79
Non-Cytoplasmic	253	276	0.69
Transmembrane Helix	277	295	0.91
Cytoplasmic	296	305	0.61
Transmembrane Helix	306	325	0.72
Non-Cytoplasmic	326	355	0.84
Transmembrane Helix	356	379	0.87
Cytoplasmic	380	395	0.82
Transmembrane Helix	396	419	0.85
Non-Cytoplasmic	420	432	0.61
Transmembrane Helix	433	461	0.73
Cytoplasmic	462	482	0.55
Transmembrane Helix	483	503	0.56
Non-Cytoplasmic	504	504	0.32
Transmembrane Helix	505	524	0.80
Cytoplasmic	525	782	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKKMSLRQL FSDRPPLNAV LQEKAQKLRY ACSPSKCIHS LLSFLPIITW LPKYDWSHSF  60
   61 FGDLSGGLTM AVFSVPQGIA LASITGVPPV YGLYTAIFPS FLYIFFGTSK HNALGGFAVL 120
  121 SLMTHGAIEK VMLRTATSYN ATAYVNHTLD ELLDKENETA LISNTTLMQI LGNETSFVEE 180
  181 VTMEMWTEGV TPVKQIHVAT TIIFLAGVIQ VFMGVFRLQY LTSLFSEQVM SGFVVGGGIH 240
  241 VFFAQIGNML GIELPRRSGP GYLYYRIWDL VENLDNVHIP TVCISLSSFL FLVFGKEYLA 300
  301 PWLNSAFNYP VPFELVLVVV GITATNYAEL SLRHDVKVVG NIPTEFPPPS LPRFDLIRHI 360
  361 GLNAAAIAIT AVAIHITVAK VVEKRYKYKI NHGQELYALG FVGVLSSFFP VFPVTSGFAR 420
  421 SVVGAAVGGS TQLTCLFSSL ALLSVILCIG PALEYLPQCI LSAMIIFAQK GMLEKFGELK 480
  481 SLWPVFKIDF TIWLMSFFLT VCYDMGEGLL MAIGFAVLTT IIRTQRPKWH FLSRDDDTEN 540
  541 YKETKKRDLE RIQGNVCIFR MDAPLIFTSS DRFTMSVWQC VKKWERCKSE SFVTIEQMNS 600
  601 DRSADIFDSK LKSARRRWKR DQKSENRCKL VIDCDGFPYV DYLGLSTLKS VYVDLQAAGI 660
  661 QCFFVVQKSD LKKLFRATDF YEVVDESKVF NKVGDAVKAA EQHISSPKTT KEILTALASI 720
  721 ATTDTVLIDE ESSDSNDNDD AEIQERITEE SENSEEVMSE TSVSIEDATS LTSSRNSINS 780
  781 EE