YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37904
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIIPLTILV SPLVISAYFE WTKIQEFQFP VVHLAFHVLG FFYYIATTYV FQTIGTTFVL  60
   61 QWMQWPFVGI DGCDGQFTPS WSLINSFLIF FMIPLGPYVF LKEPVRCVPS MRIVCLLETS 120
  121 LVLYGICLTN FGLAILCTAF VVPIVFLMTY ESSDRTRSIF RSSVLAILNP ISVLAFVAIN 180
  181 IPGMFGQLFP TISQDSWLAA AQSIALTAIR EDVEFKVNHF FLLCCFGYPI WNMLFACSMR 240
  241 YGPEPQGSLG IFGNGSDDDD GDDDDGPQKT NRGHSTKKNK RE

Type	Start	End	Confidence
Cytoplasmic	1	33	0.61
Transmembrane Helix	34	60	0.77
Non-Cytoplasmic	61	80	0.70
Transmembrane Helix	81	101	0.91
Cytoplasmic	102	107	0.74
Transmembrane Helix	108	128	0.60
Non-Cytoplasmic	129	130	0.49
Transmembrane Helix	131	150	0.86
Cytoplasmic	151	162	0.60
Transmembrane Helix	163	186	0.82
Non-Cytoplasmic	187	216	0.57
Transmembrane Helix	217	238	0.67
Cytoplasmic	239	282	0.55