YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37899
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQDSSSPK YMRFLLGNFT SAEMVTDGNF LIYCIEMGLL VIGVLENIFM IGAVFSTSCL  60
   61 HLNLRILICN CCLGFILMAV GRAMIAVPLC IAHLRDVMRG ASLLMRCIIH RLTRFAFHSY 120
  121 SLCSKEPLWF IPMFMILGNF LDRANRMEHF LLYPHLPCQI EYLTPTMFMI TIFIIVIGFI 180
  181 ASVGGITIVY NKNIKKYNTR DIWFNTVNLS ERYQITENIR STHLLFPLLA LMLIFSTLSV 240
  241 SVLIYGGYWV SVMTKEPARF EEVVKWFGRG GEAAQLFDII TAIYTISFPI CAFICHPNLF 300
  301 RFLRKFIGWN SYAVRPSNLN EIGGFEMSTA PIRTQTEFHF QELSRQWNT

Type	Start	End	Confidence
Cytoplasmic	1	29	0.64
Transmembrane Helix	30	55	0.77
Non-Cytoplasmic	56	63	0.45
Transmembrane Helix	64	94	0.74
Cytoplasmic	95	114	0.57
Transmembrane Helix	115	137	0.56
Non-Cytoplasmic	138	168	0.84
Transmembrane Helix	169	190	0.94
Cytoplasmic	191	223	0.95
Transmembrane Helix	224	245	0.92
Non-Cytoplasmic	246	275	0.91
Transmembrane Helix	276	300	0.85
Cytoplasmic	301	349	0.98