YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37897
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	68	0.90
Non-Cytoplasmic	69	76	0.79
Transmembrane Helix	77	99	0.87
Cytoplasmic	100	118	0.95
Transmembrane Helix	119	138	0.92
Non-Cytoplasmic	139	146	0.67
Transmembrane Helix	147	164	0.93
Cytoplasmic	165	171	0.78
Transmembrane Helix	172	192	0.88
Non-Cytoplasmic	193	243	0.54
Transmembrane Helix	244	265	0.89
Cytoplasmic	266	273	0.37
Transmembrane Helix	274	305	0.56
Non-Cytoplasmic	306	312	0.37
Transmembrane Helix	313	335	0.88
Cytoplasmic	336	339	0.31
Transmembrane Helix	340	361	0.73
Non-Cytoplasmic	362	370	0.50
Transmembrane Helix	371	396	0.86
Cytoplasmic	397	407	0.46
Transmembrane Helix	408	431	0.78
Non-Cytoplasmic	432	475	0.62
Transmembrane Helix	476	498	0.71
Cytoplasmic	499	510	0.80
Transmembrane Helix	511	534	0.90
Non-Cytoplasmic	535	555	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISDVEENS TPQKENVLQR SCSLTSKSLQ NNLNIIEKFG QQIRPYFGIG SLLIFLVVYH  60
   61 GFLVAAGIHN YQKAAPLIYV TLFFWICYLL NLIVGTKTFR AVYDDVGRKL EEITEQKKFV 120
  121 PLSLKIAFIF ALLAFTIIDS IHDLTRLTGF FAYVFYILFM FVFSNNRMKI NWSVVSSALI 180
  181 MHYCVALIIL KWSTGQWFFQ KFAELIVGFL EFAQVGAKFV FGFIAGPPNI CDLAPVFIFT 240
  241 SLQTLIYFSA VVALLFYFGI IQVVLQKSQW FMKVLIGTTP VESVNAWACT FLGMSEAPLM 300
  301 VAPYIEKLTD SEIFAIVTSG FACVAGTVFT AYVALGACPI YLLTASLLSA PMSLACSKIM 360
  361 FPEFFDTLCS AGVALVPTVF AIGATLVVIM SLLAFLDAVM EYIGDLIGYD GWTFQMLFGY 420
  421 AFFPLAYMMG VNDNSDQTLL VAQLMGTKTA VNEFVAYNNL GILQKAGKLQ PKSVVIATYA 480
  481 LCGFSNFSSM GMSIEFLGGL APSKRSTISK LVLRALCAGS IACFMNATVA GILISSPVIC 540
  541 QSSQKSDTCF RIPSG