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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-8
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRRKSKGN RVLIEIETTV VYRETQRMVI YMPKHRKRGY CFSVALSCTS LNSSILFFIF  60
   61 LLLWVNHNKV IHTQVINWMP LKFKILIFDN IFLNKENADG LRGQSFSLVI AGPKKSRATL 120
  121 EVQIVDVNDN SPQFSNTPSS FEISENAEIG TDIFKVTTLD PDTGISGISR FSVEGDSSFT 180
  181 LAKRKCSSGK CSTQLRLAKK LDFEEKPIHT FNITAKDGDP HSNRTHTVAH TVTIHVKNEN 240
  241 DEPPKFLTDF SQVFPIFKST KPGDIIAKLE AIDVENGAEI QFGMKENEHL KIDSKSGNVL 300
  301 LKKLPTDDAL ITVELYATSS KNGKSKTVEM KLRLMNDEAT LPKIAENQEK PELCEFPIYE 360
  361 AHLIQGTGTF STPLKIKTLK SMAEEKPRLI GGSESFDLNV IDDFHVELKV LNAEKVASQV 420
  421 LDSAQLLVKS QSGQCRIVLR SAAQMTPKAS PIAQKLKIIP KFEKSEYQFQ VVENREPTVL 480
  481 GEVKVISDGP VTYEILGENG EKFQISNDGE IQNLEPIDRE TYEKFELIVK ATDLNGSSGK 540
  541 SQLIIHVKDE NDNSPIFDKE HYFITVDEGK SEKLKITATD ADSGKNGQIV YSIDQKIDNL 600
  601 PIDISPDGML FIGAIDRENM GNSNEVNLTV TASDSGEPKR SASATVTIRV KQRYSTSITH 660
  661 LQDINDNSPV FSNSRYSIPL DANISPGGII GRLEATDADS TSPNNYVTYT SGDPKFTVSD 720
  721 SGEILFTGPG TLEKSASLEF NVTAQDGGDP MNSANALVVI NEHRSMKSIE NELTTQINSN 780
  781 DTGGEKSEIK WLNAGMPGYT YEIIRASADG FSDSEVATWI SIDSKSGRIY TLKKVDPSRV 840
  841 KQIKLHISMR KGKREVPVEL IINVMDTDDV TPIYSTPTRK LSVTESATLG TTVVDMPVEG 900
  901 IKEQNEIKYS LKITSGPRGK LQIDRYGTIK IIKSLDFETE QIIKGIVEGM VVKNGKAAKS 960
  961 SFILTILDAN DNRPIFKNSS NFAVSLLESS VLGTVLDLPY PLATDRDSSK FSTLKYSMTG1020
 1021 DEGYFKIDES NSTIRLVAPL DFETQRVHSL SIKCVDNQGR EPHHEVFASV TVTVIDVNDN1080
 1081 APVIHNTDLT HLSIEEDAQV GQVVTVLVIS DSDEGGVQKT EIDVNSTLFR ADSDKKLVVI1140
 1141 ASLKGHAGQR ICSTVTATDV GGLRATSPYC VTVYPAKNTH HNPLVITPKQ NSIHYFDENI1200
 1201 VYDELLKVKV LEEDGDIGNV TFRLDEMFKK ILACRINNCT STHLFISVND RNDNCPMFPK1260
 1261 QDVRLTVLEN EKGKRQVGRI PAALDSDFHS DNTKVCYTTD TPLFFFSDPT LPILFTNSSF1320
 1321 DREHKKQHQI SITAYDCHLS CRDPHKPING TIVALIDVLD INDNFPKFSE KIYTSTVVQG1380
 1381 HVTTGSHILT VQATDLDEEP EGLKYSIRGF VRSPSHSFVA AESPISIDKS TGELSATEIL1440
 1441 KDSSYSFTVV VTDGAGHEDT ASVVVIDLSY ELSTNASFQI SVVTYAQQTE LVFDAPFELI1500
 1501 MKNEKKIAEN LSNATGLQTI VDKCRQNANF TLMLVHFMDI NGQFVNVDRA VNLLMSSSAE1560
 1561 SRRELRSVYG LREAFPPVPI PSKVPQYILI AVLLFFVISI LSMCIWCRQR NNYERKLRHI1620
 1621 SAQASTVHTV TLGRGGKQTC NPGYGEIPII SRHHHPPPAP PPPTSADLQS TEL

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