YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-40
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGFSLYLYY LLLISSTTSY NILVFCPLFG HSHSTFFGRL ADILTEAGHN VTLFSPTIID  60
   61 EFRNYSYTKL TKDVAYLDPS PELKAIGDLI AGNKRWWNQE FSVFEIPQTT RFFKSITREQ 120
  121 NNVLANNLAL LDGLKQKKFD LILFESVFTC ALPLMEYLEI KSFAVAQSIA YEPITLGALG 180
  181 DTVMTSHIPN LMAQSSDKMS LCERMLNTLI QAMLNVYGMT PEYYQSYTNP EKKIYTLEKL 240
  241 SEASFIFMNS NPFLDFPRAT ITKNIQIGGI SVNLDTLKSS GKLTEEWDQI LNLREKTLLV 300
  301 SFGSVILSQD MPFAYKVGLT NAMKQLNDVT FIWKYEGDDK KEFANGIKNI HFSKWVPQRE 360
  361 LLADPRLSAF MTHGGLGSVN EVSYFGKPTI MCPLSGDQMR NAKMLERHNG SIEFSKYDLH 420
  421 NEKVVANAFR KILYDESYTL SAKRLSEHLQ FQPVKPKELF LKHVEFAARF GKLPSLDPYS 480
  481 RQMGFIQYFL IDIAFIVLTV VLTIVSVLYF VLKFVASCLK AKIKTD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.74
Transmembrane Helix	7	30	0.72
Non-Cytoplasmic	31	487	0.98
Transmembrane Helix	488	512	0.90
Cytoplasmic	513	526	0.92