YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38801
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHGFLREFP ISKSYISCGT TFHMLLSHFK FNFSHFPDFY KTLLLAVCCF SAVDGFRNVC  60
   61 SGSDLSVRSN LDVKQLSELL KEDPCTHVAG DVVIENLTDI AIPIEVYKRV RHVHGSIIIA 120
  121 NNTNISSPIH FPSLRSINAS LLPCILVLFN ENVKFSVGGQ FSKALTQHPI KFAVLKNKNR 180
  181 VIDMNDYNLW YLAGHPARTF LIDSSLSAEI CLEDVFKPLA GIMGFLFVAL ASALSTILFY 240
  241 DRSN

Type	Start	End	Confidence
Cytoplasmic	1	10	0.67
Transmembrane Helix	11	29	0.41
Non-Cytoplasmic	30	41	0.56
Transmembrane Helix	42	56	0.35
Cytoplasmic	57	218	0.58
Transmembrane Helix	219	240	0.90
Non-Cytoplasmic	241	244	0.52