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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-10
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREISLTFFI LLLSGELIAN ERHHEHSLKH VQKRHDIPLE FIMNSQEHSD IRRSVRLEKE  60
   61 PNLERLSSDK FVVRRDSSDS STEVVGDENS VPDKFDQPSY DFMLPEGKTE NSTILAVVDF 120
  121 ITRKHNVKPA FVVNFDENEW FAIGNVEKTR ADNADVYKAT VILRQNSNVE IAKTEGGLYR 180
  181 FVVEAQQGEV VLATTNISVD VIKLAPTTKR TRVTVPDRPK LMETTVPVTS SSSTSSEMIE 240
  241 VDGESETQED LTLGGGGAEA TSTETTTVPM TSPEEEVVTS SAATSPASTA DFSDDDDLTI 300
  301 PVTSPEPTQP KDSEEEEEVE VLDGSGEGSA DVLTTTETNE GSGELLDSST SSNLPASSSE 360
  361 ASLVEEEEDP ITGPVSILPL QNSPDGIIEP LDIQLTISPS DVIKVPRDAR PGDVIRNLQV 420
  421 EFQSATENLR KTKKIELEIE PAGFLEIRPK ILNFDEKAMI FIGDLAESLS ENLQIVAKIG 480
  481 NSTLRTPIRL DLTEYLENPG NSDGSEMLSL REVEFAVTET AESGRTIGQV DSDLKIIGGN 540
  541 GNRKFSLVGN DLILSCSQFD TEKCLENDDQ KSFSLILMPK NGALAPVQVT IIVQQKANLR 600
  601 TSDKVIRISD NRIISPFAVI TERTRKDIQL GGDAAKFLGF VKAQEGLYQI IVINSAASGR 660
  661 YSLDISIDDD TQSKTIEVFV ENSQSHAHFR KSKYSLEVDA GKVENGLKLT QVELEGVPID 720
  721 EAKIMVLDGN PGWVTVEEYG GKVNVGKYDG PIYNGKFPIR IGAVDKKTWT ILTETIVEID 780
  781 VKNGQEPLEN EQKIEEKSGK SRVLEATFDR EKSEDFEIQL DEKNMKLDLK SMYGIDEKGQ 840
  841 KVTLDPTSIT VTSTHVQLTP DSLKSLRLIG MTLKNPDSQK INILVRLISS PEYLKNQEKL 900
  901 AQRPIYPMPW TRENPVIHVE LREELAQGQV VGVFPAVSQG NLSREIQISG LMSDAFDFNG 960
  961 TTGELKIKQR IDYETLDEAQ KTFNLTLSSG ENGFKSEAIL MVQVTDVDDN SPVVDVGDAE1020
 1021 MISLPENLSA GTKIAEFDVT DPDGSESYQV ELEGDGSKNF MANITSSNTT ATLSIFIAEN1080
 1081 AKIDRETQDF IALLVKILDI SGNSEKIILP IRVLDVNDNA PQFEQNLYDV EVMEDLPSGM1140
 1141 VIHRVHAMDS DAPGAASTVN YQISNPSDVT DDVISVNSTS GVVQISGSLW GMPREQPYKF1200
 1201 QVIAQDFGAP GLNSTSILSL RVRNKDEVVT EEAVEFEEIT QEVVIQENLA PDTKIYTAKA1260
 1261 VLRGIPSKTR GKVVYTLKDL LSSEKEPIFA VDKDSGDIFV VKPIDFEERS EYTVYSMGKL1320
 1321 EKLGRSLLKK LRSSSSRRDN VPTSSSSSSD SDEYVHKFQV VPPETLDDRV GSPGAGSDEG1380
 1381 SAGYATDDTV MSSLSPLDIK RESVDYSESQ GYYSNAELSP GTVPAHLSPR QLSPTVPSEG1440
 1441 YEIPIERRVT VPVQKPKEPA HLTENTPVPR IPGVTVEDPA HQTTSLRNTV PLRQFSNQRS1500
 1501 TVPLKEPARQ TTRSAVPSPT VPKIITVPEP AHQTDSQRVT APSPVPRILG VTIPESAHQT1560
 1561 QTLRSAVHTP TVPKILGVTV PEPLRSTIPG ITVDLVDPVP RTTHYKKQDF PKINIRNRHH1620
 1621 PIYKSSNQLL AAAAESNLKF PAKIERAATL SNLAAEPEDE DPIDKFMRSH IYKTKMITTV1680
 1681 FEAKDRGFEE IGDDVIHEID RWFETKNMMA VACELHWSVP REKRSRQLEC RLKEKLLQAL1740
 1741 RENNKRLLYL RGMGHGKTPV KLAESSTVEN ISKDRETDSV RGIYQRSYTR LLPYLHKETP1800
 1801 EWHSQYWTLQ DLEKSDDVES PNYPIQPNPQ KFLFDTEPAE LLITAFNSGN ELVTSSTLLK1860
 1861 IRVENLDDNE PEFLPSALPI FQVPKNTSKP TAIGRLTARD ADFSPIFYHL LPNCGTPESS1920
 1921 DNFNIDAEFG EIVYEPKVDP SSKMTEAEVC FIATSQKNLD TSEVFFDANS KNFKRVKVEF1980
 1981 VGDSVDSVAN SGKINNGFSG NQSISSVGDV LDRVEIPMNL GAAAGAQDYE QKSLNFVPAN2040
 2041 YELGRDMISP EGAVELNKNT GELVANGKIL DTPQGVYTAE IGRGDGGEGV KQLHHIRNDR2100
 2101 KLRYVLSMSR NEFGANLEKF RRQILEAIGK DDQKAGKQLE IHFDEPKADR KNSTWTSVCF2160
 2161 YLTRQNAILD ENQASSIISP SNGHISKLHH IFKVQNVDMC APKPSATSSE STSSSNSDIP2220
 2221 LNTLILIGVV GLLIIALLAL LIYVCCVSRY QRYLKQKTDQ LRCSSSAGSY YKSPNLIPPP2280
 2281 PPGYMHTPPL PPPPPPMAIA YY

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