YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-35
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCRKTILFF LISILFQNSK SVNFLVYCPL FAHSHHTFLA KIADTLSEEG HNVTFLAPII  60
   61 VQKYENFKYL KHTTDIIYIQ PDEELKKLGE IMGSAGFSKY WTEEPSVFSM IPSIKLFQKM 120
  121 FHKIYENLRA DLSILDSLKD RKFDAMIYEV LAFNAIAIQQ YLGIKTLYPT FSVTHGMVLS 180
  181 KSIGEPASPA TLSSALSPYG EKMNFQERLM NTVCAFIYQV FMKPPKMISY SHPYYEIDLK 240
  241 EAESKASFVF LNSNPYLDFP RPMLTKTVLI GGISVNTSQI REERLSDEYH NILNIRVKTV 300
  301 LISFGSIMLS TDMPDRYKSI IVKVIEEFPN VTFIWKYESD ELDFANNLKN LHFFKWIPQT 360
  361 ALLADSRLSA FITHAGLGSI NELSYMGKPA ILVPIFADQL RNAKMLVRHN GSISLEKQDL 420
  421 GNFEKLRVSL AKILKDNSFQ ENAEILARQL NNQPISPREL LIKHATFGAE FGELPSLDPY 480
  481 SRQMSFFSLN MIDIFLFLGV FLAILVYFLF TFLRLLLNLL LKKKAVEKSQ ENRKTK

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	490	0.99
Transmembrane Helix	491	516	0.87
Cytoplasmic	517	536	0.96