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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sax-7
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFIFLLLL TGHISSGSID WSAIETPPQF VHDKNADTVY FKVEKSGMSD ESAKNTPGNL  60
   61 LEQTIHCYAN GNPRPSYRWK KDGKTFLPSM FPEKVVQKPG EGSLVFSRLD ESDAGLYQCE 120
  121 AENSNGTAVD RPVRVQETWI RHFKTAEPEV VVVEVGDPYQ RNCSPPASNP YARVYWILMG 180
  181 KEPGHFETIS SSHISSNEQG TLFFHYVNET DFKSDRYYTC TAENIELKDY KFGNQFSLQI 240
  241 TNNKRRSLQQ MPPTEQYVNQ SSPIALQGNQ HKLHCFFSGY PAPKPRWFHN GREISEDSDA 300
  301 AGFRFESYGK TLVFNVTQDK AGKYDCRFAT QQDIDRTFNV VVEAAPYWPL GPPPNTNTSE 360
  361 GEKVIFDCTT YGKPTPKVTF YKNGVEIESQ KDDRYLIEGT RLTIFDVKKG TYGKGDNAVY 420
  421 QCKSENKHGW LWTNFYLNLL AFKPQLLIDP GKEEVEAVAG KKVTLECKFF ASPNAAVKWE 480
  481 APMISGSKGN QIPADAYGVG KLVFSEVTAA EEGEYECIGT NKYGQATGLI TLKVRKPTIV 540
  541 QPFPRVEEVR MAGEEMRLAC DATADNQLEV KYEWLVDGKS LPEDRISSGH YKIDDDHSLV 600
  601 ISNPTQDDTA KYKCVVSTKL DQVEKEIKIQ FKDVPVAVHS AWVQTCDKNS LTAFIKFEHY 660
  661 ESIHTIAPIK EFWVQYQIDS ETEGSQWRTH PVPSAAHPND KIDNNLRHTT GDATVSLQPF 720
  721 GKYVFRVIAR NSVGDSAARL AKDQCETPAK QPDKNPDEVA AKGTSPENII VQWKPMSREE 780
  781 WNGADFHYVV KYRPKDEDQR VGDWKEVAVE DPFADRVTVN LDDEKDVKPF QPYEVQVQAV 840
  841 NSEGRTNVVP ETVEGRTGEG VPSSIPSGLR VLEKSGTTVT LAWNGVDPQT ANGNFTGYKI 900
  901 TYWVDEADQD SDDSSEDDED DEKRKFRWKR SIRVKRQSGI RKTVVFGPSA TQGTLTDLKP 960
  961 ATLNHAYIQV TNGAHEGSAS DTIDFQTDEG VPSPVRSLRA YPMNSKVGGE KGVVVLVWKK1020
 1021 PRQTNGKLAR YEVEYCKTQN GKLVEKSCPR KQIDADSKEI RITGLENETP YRFILRAHTS1080
 1081 AGEGDPNSSD ATTLPETTAA GVDPGVPSLV ENAIGDKYFN VSFRPAKYDD ESRAPVGNTY1140
 1141 EVQYKPQDAD EWETVKPADD GLTVHVDGLS PGTKYDVRVA ALQVDPEGGE TTKTLSGISK1200
 1201 ITTTGTSSRE RNVYLLILLL LILLLLLIIC CICCVVCRQR GQNYPVSQRE REQGREPILG1260
 1261 KPDYKTDDDE KRSLTGSKAE SETDSMAQYG DTDPGVFTED GSFIAVSGQY VPQKSLMPAE1320
 1321 RPEKGSTSTF V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle