YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srxa-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLFYILFS LMMFTALCIS LILMISVYTY KRKDQLPVVY IYLMIACSIG CCFVEFQSDI  60
   61 IPYFMKRKAY MWMYSNLGES FTLFDTFVYI YPMFLTVLMV SERIYCILYP FGKAFTNKKL 120
  121 WCYCFLIAIV LLSILLIPFF GGCADNYSFY DFDYTSECEP DNHIVTYIID NYSRLFPVLC 180
  181 LFLNIGIILY LSKRRKKMEN PAMKKLRTRQ SHDRTLLIQS IAATIFLLIY EIMDTLTDFF 240
  241 SDYFDALPTF TQRVIYYLQA GIVAYTGFFI YFVCTSSTRQ IVIEQVARLF GRKRMQQGRT 300
  301 GLSIRDVSTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	28	0.95
Cytoplasmic	29	37	0.84
Transmembrane Helix	38	57	0.95
Non-Cytoplasmic	58	80	0.88
Transmembrane Helix	81	101	0.84
Cytoplasmic	102	119	0.81
Transmembrane Helix	120	142	0.93
Non-Cytoplasmic	143	172	0.96
Transmembrane Helix	173	192	0.95
Cytoplasmic	193	214	0.89
Transmembrane Helix	215	233	0.96
Non-Cytoplasmic	234	253	0.94
Transmembrane Helix	254	275	0.88
Cytoplasmic	276	310	0.94