YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	olrn-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLARKLAA EYIREIVFFR EETTEKSGRK SPKSPIECRK LSKAPPLCCK NGEECKVAGN  60
   61 CVCKPPKPTG PNDEKPTSSR ETYDVFLGGS CGTTVWRRQS VIPFLKKRGI TYYDPQRSFW 120
  121 SENMIYEESI AKESSSLFLF VIDPATVNAT SFLEIAYFAA RKSPKLVVVF LGKTEWAEKA 180
  181 HPDDLPDRNR TCQLLDRILE CHQVPMLHTI PDALEFIEEE MLGRQSLTEA MRSKNNRLPY 240
  241 LQIRARRVVR NVKSLAAQTI KVCKNYATKT VVTGLIDLTV LLSISFAFPA LPLFYILVPL 300
  301 LMLNIVFFGV IYKVQELRKR YPRMIADSSA VMYHATAAIP SPRVTLKATN VNGTISSKTL 360
  361 VRRRSKQNFE KFFPDDSGAS SFIVPSSFLP KQHETKVNID CSVVELCSSS PDDNSWVQEL 420
  421 AAPTLDGKGT PYSYVLATPN FQLDNRMNCL RTWFHHHKKF FYYIPSTTTF LSGMVEIAYI 480
  481 LGHTNWEGTV CVPATSQILE GPDDMTADEK DHARAARRRR NDCYQIAFCY LKDMAKRRQC 540
  541 RVFTDIGVAV KALVDPAIRG V

Type	Start	End	Confidence
Cytoplasmic	1	265	0.55
Transmembrane Helix	266	287	0.50
Non-Cytoplasmic	288	292	0.64
Transmembrane Helix	293	314	0.91
Cytoplasmic	315	459	0.95
Transmembrane Helix	460	480	0.62
Non-Cytoplasmic	481	561	0.68