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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cam-1
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGRLPDEE DADLYRVPDS AAGSNYAPVA VSERWLDGIK YRVGDCVQYR GEACRQYLSN  60
   61 KFVMMTNESR EEMYDIDRNL RAAMLFINGA PTISQKCRQL SQAVACHHMY KVCESDSNNQ 120
  121 IVSICKHDCD VIQNDECPSE LALAAQHELV GDTPKALFPL CSRLSSTSNC IPVMSTALQS 180
  181 SPVAEVNRGH LTHWCYVNSG TQYEGTVAQT SSGKQCAPWI DSTSRDFNVH RFPELMNSKN 240
  241 YCRNPGGKKS RPWCYSKPMG QEEYCDVPQC PSDMYPHLND KKVEGSTKGG VSESVTALWD 300
  301 SLDPTMQVAL VGGGVFFSLL LLLLFCCACC CRAKKKSQKT RHQNAHCSSA PSVINSAANS 360
  361 AYYRKLNGTS TPIMGRVPPH VEMTSLLPSA QHLGPPPYPM DQHLQQARRF PSQEPIDDNS 420
  421 YKVFEITPSQ LSVREKIGEG QFGVVHSGIY TSGLFAPEPM AVAVKKCRHD ATNAERAQLE 480
  481 QEIRAVATFD HPNVIKLIGV CYMDNSLLAV FEYMVHGDLH ELLKVRVPPA DHDMGGITEA 540
  541 NAEFLYIATQ IALGMEYLAS MSFVHRDLAT RNCLVGDTRT IKIADFGLMR TSYGSDYYKM 600
  601 LHRSWMPVRW MSKEAIEQGR FSEASDVWSF GVTLWEIWSF GRQPYEGASN QQVIELVANR 660
  661 HLLECPHNCP TNIYSLMVEC WHENIERRPT FSEIRSRLQS WSLASPAHSI LQQHNNRAGS 720
  721 HSGSSGAGRP PTHQRGYPSQ KLHRRVEGAS PLMKRHDANY AYSEDGDSD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle