YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-36
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSDVLPII TNGSSCASEF EIGERTSYSS RLNIFLHNLV IILTMVFTRK AVKIMLSKSM  60
   61 FSTTTRNLLF YCMNYYIFHD IYFAFTMNWS LYRSIEKSNN SCGIMFKGSE CFSYYVIGIF 120
  121 VRVLLLTSQF AVTIEKLIVT FLPNSDLINS GTLNIMTFIM SVIITSAIRP PSYSQYNNPN 180
  181 CFQQIYPEME TINYLIHLMI GFDLICFPIN FLIMIRYRRK FLKSQNSGDY NLKSRYNNKS 240
  241 NMNSSIIVSF ISFVQTLIYT IYILGFFIVL NIYVNADGLF YGNNVALWFY SFPIAGLALP 300
  301 CSIILSYTGI SIKRKNKITV MNTKITKSGN YMQDAYFKSL ADQWNSARVT EVGS

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.64
Transmembrane Helix	34	52	0.71
Cytoplasmic	53	66	0.74
Transmembrane Helix	67	85	0.78
Non-Cytoplasmic	86	111	0.85
Transmembrane Helix	112	133	0.85
Cytoplasmic	134	146	0.83
Transmembrane Helix	147	168	0.86
Non-Cytoplasmic	169	193	0.92
Transmembrane Helix	194	214	0.95
Cytoplasmic	215	245	0.94
Transmembrane Helix	246	270	0.84
Non-Cytoplasmic	271	286	0.88
Transmembrane Helix	287	310	0.90
Cytoplasmic	311	354	0.99