YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-34
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVSTPGFQR CATENEMIGR TAFLFQSNVY TNNIIAIITW TLTVVVLRKL YTKSIFPNST  60
   61 LVLLVASLAV GSIHEFLYGF IQNWSLLRSL VYWDQPCKIM FNEYECYPFY TANIFIRLLM 120
  121 ICTNCAITID RLITLSNVGI KSTAQRGIVL FILSILVSVG VCMYMTSDGP NDNLQSNCFQ 180
  181 RQGRNIDELT TQIMIYLYII AICLSLNTIG WFISWRNLKK DKFNLAVQMS KQESINSSLV 240
  241 VTWYLVSQII FLGLYSILIY AVIKLKDVIG PLLVTNVVLW CYTYTYACMF LPIIILTSTK 300
  301 IISLQRREKI NGLTKENQNE NQKSYFDKLD RSWSQGYGNR YAPNVPAPVV CINSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.80
Transmembrane Helix	29	47	0.78
Cytoplasmic	48	58	0.68
Transmembrane Helix	59	78	0.92
Non-Cytoplasmic	79	113	0.86
Transmembrane Helix	114	133	0.87
Cytoplasmic	134	146	0.85
Transmembrane Helix	147	167	0.94
Non-Cytoplasmic	168	193	0.96
Transmembrane Helix	194	215	0.93
Cytoplasmic	216	238	0.93
Transmembrane Helix	239	262	0.90
Non-Cytoplasmic	263	279	0.85
Transmembrane Helix	280	299	0.91
Cytoplasmic	300	355	0.96