YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41338
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISERAPLLE NGVPHIYNTD EGRKTTVTYD NFHCHDEADS TDSHDSNRRA TRILWLTVVL  60
   61 CLFFMVCEVI GGVLAGSLAI VTDAAHLLTD FASVLISLFS LYIARRPPSQ KMSFGFHRAE 120
  121 VLGAFFSVFL IWIVTGVLVV LAIMRIVSGD YEVEGGIMAL TAALGVVVNL VMLALLYFGG 180
  181 HSHSHGGGSS HGHSHGGGNG DNINVRAAFI HVLGDLLQSL GVLVAALFIY FQPSWVIIDP 240
  241 ICTLVFSVIV LCTTIYILRD AMIVLLEGRP SNIDFAKVFS SLEDIEGVKK VHDLRIWSLT 300
  301 MDKIALSVHL EIDANSQSQS ILRETRKMLK QTYNVHEITI QIEEFGANRS DCGKCDFPTK 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	52	0.99
Transmembrane Helix	53	76	0.91
Non-Cytoplasmic	77	83	0.76
Transmembrane Helix	84	104	0.93
Cytoplasmic	105	121	0.93
Transmembrane Helix	122	146	0.89
Non-Cytoplasmic	147	156	0.86
Transmembrane Helix	157	179	0.93
Cytoplasmic	180	208	0.94
Transmembrane Helix	209	230	0.91
Non-Cytoplasmic	231	236	0.77
Transmembrane Helix	237	258	0.94
Cytoplasmic	259	360	0.98