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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-6
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENSNNFST PLLPQSDEKK PSQICSFIRV VFKCSSCFEK FLFLLGVLFS LMTGFCQPFM  60
   61 SYTFGEVSQV LVTITNAINN KTIDPADLEK AYEEYERGMN QVVFHFFLCG CAYFIFASLQ 120
  121 HAIMKYVGDN TTYRVRKQYI SRLLKKDAQY FDSVSTGHLS TVLNDNLERF REVFNEKIAL 180
  181 IIAFVTDFTL GTALAFYTDW RLASYGIFFS LGIAFSGFIN SAGVMKTTGK QNTHYANAGS 240
  241 IAFQTLGAYK TVCSLNGQKT EIERYTEELK AGEKYGIRRA LMYSISRGVT YFFCNSLNTV 300
  301 VLYVGATMIY SGTLETAVVV RLFHYMLFGA FCLSEALPHI SRLAGAISST APIAEMLIKD 360
  361 DNVIEKDETD YDVEVEVNGN ISFKNVKFSY PTRPDAQVLK GISFDVQNGE CIALVGASGS 420
  421 GKSTVVQLLL HYYNIDSGNI FIDGMDLNDM NIKRLRRVIG VVSQEPVLFN TTIEENIRFG 480
  481 NPNVSLPEIY GALRKANAYD FVCSFPKGIK TIVGERGTQL SGGQKQRIAI ARTLVRNPKI 540
  541 LLLDEATSAL DNESEQVVQK ALENASQGRT TIVVAHRLST IRNASKIIVM QKGEIVEVGN 600
  601 HDELIAKRGV YNDLVQAQLL ESHDDHEELP PLAARQLSQE LSPLHSYAIQ RSTSNDAGVH 660
  661 DDDMERILDE LSKEGAKKSN LREIVKQCRP DYCFLFIAVF GSAIQGVSYP ILAQLIVRTY 720
  721 EGFAMIGEDM LYYSHLWALS FMFLAVFRPL TLYCQYYYFG KVSEQLSTRL RIKSFSHMLS 780
  781 LPCAFYDDPN HSATRLSNRL NTDSSNVKAA VDDRLGCVIM TVVAISIAIT TASLYCWKMT 840
  841 LEVLMFFPLL YLAEYCYEAA TETAIQEDTI AFENSNRTAI EALENVRTVR ALNLEDKIMS 900
  901 LISEHLQKIH KSYFKRAIIQ GAANGLSLSC FLFVYSVSFK FGTYLALRKE VAPMDTYLVL 960
  961 MTLSMTANMA GSAAAYLPDY KKAVHAAGLI FHLFTYPATM PFSSSDGKKN IEKGEIIGEN1020
 1021 VQFHYDQRPD RMILNGVNLK VDPGKTLALV GPSGCGKSTI ISLLERFYHA VDGEVKIDSE1080
 1081 NVEDINLNHL RSNLALVSQE PTLFNCSIRE NLLYGLTRSV PQLELEKALQ TANAFNFVFQ1140
 1141 FPQGLDTLVG ERGAQLSGGQ KQRIAIARAI LRNPKVLLLD EATSALDSDS EKVVQNALDT1200
 1201 ASERLSTVVV AHRLSTVVNA DSIAVLKNGK VAEQGTHEEL LRKRSIYWRL VQKQGIQVET1260
 1261 PSD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle