YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41296
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	15	0.81
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	108	0.84
Transmembrane Helix	109	130	0.93
Cytoplasmic	131	146	0.72
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	176	0.75
Transmembrane Helix	177	197	0.77
Cytoplasmic	198	216	0.53
Transmembrane Helix	217	231	0.46
Non-Cytoplasmic	232	232	0.15
Transmembrane Helix	233	247	0.56
Cytoplasmic	248	269	0.70
Transmembrane Helix	270	291	0.92
Non-Cytoplasmic	292	297	0.65
Transmembrane Helix	298	319	0.78
Cytoplasmic	320	330	0.67
Transmembrane Helix	331	351	0.85
Non-Cytoplasmic	352	353	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWFILLSSC IAIHAQQGLL LDLHPAAGPQ FFEESILGNA NGDKLNNEFA DVPIDSLMDP  60
   61 EGKPIHDPLR AHAMVLEEEL RKEAAEIQKI MAESEKEDMK KGEVTSATWI YALIGCSLVV 120
  121 STGILPAFLL PANIHVLLSS SQGQRRLNLL LGFAIGSLLA DVFLHLLPEA YESNENHVSI 180
  181 GLCVLAGYLT FSLISKLASS EEEQHKACAY LNLFANIGDN FAHGLAVGSS FLVSTKFGIM 240
  241 TTITILLHEI PHEISDFAIL LRADFGKTNA ILAQLTTAAF GVLGSLVALH LHTSNVPVIE 300
  301 TLLPFTAGGF LNIALTELLP EISAETSPVE ILKQLVMIVT GVLTMSFLNS LSF