YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-26
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKSKIAIV TGASRGCGRG VALQLAEAGC TLYITGRAPS KTLSSELTYL PTLEGTAEEC  60
   61 RKRGGICHVR YVDHSNMDEV EKFFDEVASE TDNQLDILVN NAFSAVTKCG SGDTRKFFER 120
  121 DPEIWDDINN VGLRNQYYCS VYGTRIMRKN GMKGLIVNIS SLGGIMYLFT VAYGVGKMAL 180
  181 DRMSSDMAQE LQDTGITVIS LWPSAVKTEL ITNMIETSAG SWGATENKMF LNGESTEYCG 240
  241 KAVVAIAADP KKKYWNGSTL ITTDMGNYYS YTDIDGRIPT NMRQLRGLLS LAGYHSMAGW 300
  301 CPEWVNLPGW AITLWQNKIH Y

Type	Start	End	Confidence
Cytoplasmic	1	153	0.72
Transmembrane Helix	154	175	0.76
Non-Cytoplasmic	176	321	0.79