YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	daf-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.58
Transmembrane Helix	24	44	0.86
Non-Cytoplasmic	45	263	0.67
Transmembrane Helix	264	287	0.80
Cytoplasmic	288	302	0.85
Transmembrane Helix	303	326	0.92
Non-Cytoplasmic	327	334	0.68
Transmembrane Helix	335	356	0.87
Cytoplasmic	357	372	0.88
Transmembrane Helix	373	394	0.87
Non-Cytoplasmic	395	400	0.70
Transmembrane Helix	401	423	0.84
Cytoplasmic	424	544	0.90
Transmembrane Helix	545	566	0.79
Non-Cytoplasmic	567	744	0.78
Transmembrane Helix	745	769	0.84
Cytoplasmic	770	774	0.67
Transmembrane Helix	775	796	0.92
Non-Cytoplasmic	797	804	0.61
Transmembrane Helix	805	827	0.91
Cytoplasmic	828	843	0.71
Transmembrane Helix	844	865	0.85
Non-Cytoplasmic	866	876	0.56
Transmembrane Helix	877	899	0.88
Cytoplasmic	900	913	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILQIEPLV RNAFEWYGPV VHRWRWFCFI SPLFLTLACS VGFFRMTELR VDDPSYVFTP  60
   61 SDARWRREIS VFNENWPLDE NKFLPGKSFE AKRFVNILIR AKDGGSIMRD NVLHEIEILN 120
  121 QWIMNNISIP TDDLKFNLTY QDLCLSYDWV CGANEHIQML LRRNDVNQIL DLHFPRGGTK 180
  181 DTPVYLGGIF GDVQFFQNGT LSDAKLTQLF YFLKQDQKMV EEYSSKFSYA LETFLNQVYS 240
  241 SDVITLSFAH YQSLEDGLDE NAKAFVPNFV VSFFVLAMYA LVSSFTLKSS SATKIDWISS 300
  301 KPWLAAAGMF STVLSIISAF GFLFILGVRY NVINTIIPFL IIAIGIDDMF LMNACWDQTS 360
  361 KSLSVPERMS KTLSHAGVAV TITNVTDVMS FAIGCITDLP GIQFFCIYAC VSVAFSYFYQ 420
  421 LTFFSGAMAI MGEVEREKRH CLFFYRTFQL VDISKMNEEA DSKLQQIKSR SASPAPFNYL 480
  481 SSSNSSFSSD SDSFSSKKTI PAEFAWKEQQ SPNSSLSKKS KDREEKDRIV HFIGKIYGPF 540
  541 ILSNSVRIFS GLIFVVYLAI AMYGCYNFRE GLNPGNLVTN DHYIAKYFSD IKHFWRIGAQ 600
  601 LHVAVLNPPN LTISENRNEL LKVVSAFENT QYTLGREGTV FFLLEYLNYL SELNAEVEDT 660
  661 ERLWKTKLNS WLKYTGGSTQ WASNLKINKT DGSFQAFRFQ IALKNFVEPN DHKHAAQLLR 720
  721 DIADHQPFNV VVYHEAFPFA DQYLIILPAT IQNVVISLLC MAVVSFLLVP SLPSGFVIFV 780
  781 SIVSINIGVF GYMTLWGVNL DAVSMISIIM SIGFAVDLSA HIIYAFVTSH GDTKQRVIGA 840
  841 LETLGWPIFQ GASSTIAGIS ILYTVDAYII LVFFKTIWLT MLIGAIHGLF FIPIFLSLFP 900
  901 VEFFRIPKSS ELH