YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-24
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.51
Transmembrane Helix	85	104	0.88
Cytoplasmic	105	204	0.64
Transmembrane Helix	205	223	0.44
Non-Cytoplasmic	224	312	0.74
Transmembrane Helix	313	336	0.88
Cytoplasmic	337	346	0.60
Transmembrane Helix	347	369	0.90
Non-Cytoplasmic	370	375	0.62
Transmembrane Helix	376	402	0.78
Cytoplasmic	403	416	0.73
Transmembrane Helix	417	441	0.83
Non-Cytoplasmic	442	450	0.58
Transmembrane Helix	451	477	0.81
Cytoplasmic	478	515	0.72
Transmembrane Helix	516	536	0.62
Non-Cytoplasmic	537	716	0.68
Transmembrane Helix	717	743	0.76
Cytoplasmic	744	747	0.62
Transmembrane Helix	748	770	0.81
Non-Cytoplasmic	771	778	0.82
Transmembrane Helix	779	799	0.96
Cytoplasmic	800	819	0.94
Transmembrane Helix	820	844	0.87
Non-Cytoplasmic	845	852	0.80
Transmembrane Helix	853	874	0.88
Cytoplasmic	875	892	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCQWATRAEL GEPPPSNSSA SSTKNTPYSV IVYLKSSKFS DISSSLLLQM TVAVENVKKS  60
   61 AKIGKKMILG PSLGHLGSIV GSRPWLWITL SLFIGIASFT TLIIKPPKKE FGFDTGYTTS 120
  121 DAPSIREMKA QRDFFTGGKK GTPWYQALFF EPRNNEKSMH KGREYDEMKQ FYRTVKNMII 180
  181 RYDETLEKNI TYYDLCGSTC DLNELLFTTV TMSFWSGLTY PIASIFGYES NIGKHFYEIE 240
  241 TSETGEFLSA KKAMLVYMAF YETKHVKADL KLYEELMQNA VDVHNANKDN SVIVTLHGER 300
  301 GMSIAVEAGM KHAFNYLGFG VLLSLFVLFG VLFFFSRLFC QFTIFRIVFL WIVAIIAPIL 360
  361 SFITSFAIYN FFGYSITPLI IFTPFLALIH GYYTVIMLTH TWLSDSELRR DSRDEHLLEV 420
  421 FATCMPSLIV TASPAIALLL CSVYPIENYG AVSILLGLIM TFDIVFAIFF FSPFMLIICP 480
  481 TQDFSPLPTN SKKIVKTTLK SVENMRDYYC NYVDKSLLVE IVAVAGIIAL LIIPVYKGCT 540
  541 SVEGNLDYRQ LLKQDSNRNH GVHLMSDVVW PTWFSIMFFV NKPPNFSNVR EYGRFKSMMA 600
  601 EIDAIENKLP NNTDMVWIND FCRFTNSKPT DDALNMTRFK SFIEDAIYKS WKDGVKFIFL 660
  661 NDTHPVITSM LHIVSFEKTT SLADKAKLFE KCRAVTNKYP EFKTTPFDTE IGFADIILQV 720
  721 PLVVAVIPLV GTVAMFIVST IIIGNLSVAV LNFIAVCILY ASTIGTVSLY DVTINPFNAA 780
  781 FFLIIAALAP SCTTHYCYYY QQAMRIKLRA KKVDRMNEML RKCFFPCIAS VICSIAVFVP 840
  841 TMFCHINIFE SVAFTNNVFC LLGIVIAFFV QVMLNMLPDM FTGTHWFCSP QS