YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE43261
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCRISAKAC GIGQKYIEAD CLLSDQELKR LKEHKYSAVD NSWLDELCMK RWWEFVITLC  60
   61 PMWIAPNLIT WIGLVINLIT VLVLSSFSYS ATESAPSWAY LQAALGLFFY QTLDAIDGKQ 120
  121 ARRTGSSSPL GELFDHGCDS MTQVFVTLNI CYAMSLGTVP YGVLIVSVIS VVMFYCAHWS 180
  181 TYCTGQLRFS KFDVTEAQMS VISVLLFTAI FGNGVWETPI AFGYTLKYFV VGSSFLVSLY 240
  241 QIHGYVHVIF SGGVGKNGST IAGTSVLFPL FPLLMVVIPF IMIYNKTEST VFDDHITLFS 300
  301 LCFGAVGAKA TNRLVIAHMS KSELRLWDWI YVGPLALMLN QYYDFVFDEY VLLWIATVEP 360
  361 NKFVNRRMLL GSYDEEDLLI V

Type	Start	End	Confidence
Cytoplasmic	1	58	0.94
Transmembrane Helix	59	88	0.72
Non-Cytoplasmic	89	157	0.56
Transmembrane Helix	158	182	0.81
Cytoplasmic	183	196	0.67
Transmembrane Helix	197	216	0.87
Non-Cytoplasmic	217	224	0.57
Transmembrane Helix	225	249	0.78
Cytoplasmic	250	260	0.64
Transmembrane Helix	261	283	0.91
Non-Cytoplasmic	284	294	0.68
Transmembrane Helix	295	316	0.74
Cytoplasmic	317	381	0.52