YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glt-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLSKENLL LLFTVLGVVV GIGLGFSLRD PSKAWSKRHL SYLRFPGDLF VQMLKMLILP  60
   61 MIMSSIITSL ASLDSGTAGR LGMVSMIYYT LTTFFAVFLG IVLVSVIKPG KWTTTNIEDL 120
  121 VGHVKTTPCV ATAVDTIIDL MKSCFPENLI EATFRSQKIC LKFFNGTTEI PPEIAMTMSP 180
  181 EQRAQFTEVP EKIVSDGMNI LGLVVFSVAL GIVIGVIGED GKPMKNFFKS LEACSMKLIG 240
  241 WVIIYSPVGI TFLIAAQIVG MKDPGQELHR LMGYVITVIL GLLIHAFVVI PLLCVVLARR 300
  301 NPIKFVGGMA QALLTALATS SSSATLPLSI KCCEENNKVD PRVTRFVLPL GATINMDGTA 360
  361 LYEAVAAIYI SQCYGNDLSL GEVVLVSLTA TLASIGAAGI PQAGIVTMIM VLIAIGLPTN 420
  421 LFILIFPVDF MLDRLRTTVN VHGDSIATAV IERLCEDQLQ KGGHHLDTND QGYSMLSTNA 480
  481 SPDPKRITIG NNCENSHML

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	50	0.86
Transmembrane Helix	51	73	0.86
Cytoplasmic	74	85	0.72
Transmembrane Helix	86	107	0.92
Non-Cytoplasmic	108	197	0.91
Transmembrane Helix	198	218	0.93
Cytoplasmic	219	237	0.89
Transmembrane Helix	238	259	0.94
Non-Cytoplasmic	260	273	0.81
Transmembrane Helix	274	297	0.90
Cytoplasmic	298	377	0.58
Transmembrane Helix	378	400	0.72
Non-Cytoplasmic	401	404	0.62
Transmembrane Helix	405	426	0.90
Cytoplasmic	427	499	0.83