YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41957
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.77
Transmembrane Helix	8	31	0.86
Cytoplasmic	32	51	0.77
Transmembrane Helix	52	74	0.88
Non-Cytoplasmic	75	86	0.79
Transmembrane Helix	87	106	0.96
Cytoplasmic	107	117	0.73
Transmembrane Helix	118	143	0.70
Non-Cytoplasmic	144	163	0.68
Transmembrane Helix	164	186	0.87
Cytoplasmic	187	193	0.71
Transmembrane Helix	194	214	0.86
Non-Cytoplasmic	215	222	0.76
Transmembrane Helix	223	245	0.91
Cytoplasmic	246	256	0.67
Transmembrane Helix	257	275	0.91
Non-Cytoplasmic	276	281	0.67
Transmembrane Helix	282	301	0.78
Cytoplasmic	302	385	0.81
Transmembrane Helix	386	406	0.85
Non-Cytoplasmic	407	414	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIFLAING GLSAVGAVIC YQLILTYIPI FIARKMYGND QCKVSNAPVP EPMGVICAAV  60
   61 YLIVMFMFIP FPFLEWKGQS EFPYEKLLAL LSGLISISTA ILLGFADDML DLKWRHKLLF 120
  121 PTLSSLPLLM VYYVSGNSTT VIVPTIVRHL VQPIVLLPVT INISFIYYIF MGMVIVFCTN 180
  181 AINILAGING LESGQSLVIS ASVCLFNFVQ IFRFSAENST GFWHHTISLY FLLPFTACTA 240
  241 ILFYFNKYPS RVFVGDTFCY WSGMTLAVVS ILGHFSKTLM LFFVPQIINF LYSIPQLFHL 300
  301 VPCPRHRLPK YDPKTDTVSM SIAEFKKTDL KRLGALFIAV CKSIGMLHVK EVEKDGEIYL 360
  361 QINNLTIINL VLKFAGPLHE KTLNDVLMSI QILCSLLAFF IRFYLASLFY DVVE