YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41060
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.74
Transmembrane Helix	44	66	0.57
Non-Cytoplasmic	67	130	0.50
Transmembrane Helix	131	147	0.52
Cytoplasmic	148	156	0.68
Transmembrane Helix	157	174	0.90
Non-Cytoplasmic	175	181	0.70
Transmembrane Helix	182	205	0.88
Cytoplasmic	206	213	0.88
Transmembrane Helix	214	235	0.87
Non-Cytoplasmic	236	241	0.84
Transmembrane Helix	242	261	0.97
Cytoplasmic	262	324	0.93
Transmembrane Helix	325	347	0.74
Non-Cytoplasmic	348	361	0.68
Transmembrane Helix	362	383	0.56
Cytoplasmic	384	393	0.67
Transmembrane Helix	394	418	0.88
Non-Cytoplasmic	419	424	0.71
Transmembrane Helix	425	447	0.68
Cytoplasmic	448	458	0.47
Transmembrane Helix	459	480	0.54
Non-Cytoplasmic	481	484	0.52
Transmembrane Helix	485	504	0.83
Cytoplasmic	505	550	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTSSNSSE DSINLPENGA KLEFLEKEPE QVHGLDDYIQ MGKYVLLVCL AAELLILPQV  60
   61 SSMFYMMYAG AAPRVISCDN IVFDSLLEGK EICFELDKMG NCSHPEFQYQ FRSINVEYNY 120
  121 FCNTSKLVKN SISVQMFGVL TGSIVFGQIS DSFGRKIGSQ VASLGMLIGW LIVVQSRNLL 180
  181 HFTISRTIVG FFTGGSISII NVFIMENIPK KHRMWINMAI TWSPNMPIYS YFAWLASDWK 240
  241 SLAYINAFMC IPGILFFQFF IHESPRWLVT RGKISEAVQV LQRQLKTSNQ ENLIHEDFEE 300
  301 NLRMEYAKTQ AQNTRKTKFS YYHLFVTPKL AITTIVLAYS YCATSIINYG VLFNMEKLSG 360
  361 SIYWNSVYTG LMRYACNLSF GYADLKFKSI GRKFIHTSGL VIIVLSLSLV VGSYALHLNH 420
  421 EMKDVIRISI LLASSMTSQI YIADGIVSAE LFPTPIRTIG YAFLQLWNRV GVVLSPFIFY 480
  481 LADYWLALPF CFMILFSLID TFSFECLLPE TKGRHLVEHM PPRHQWWFGA GKEEIVEVEE 540
  541 PDTELAKIEA