YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40187
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAEEEQFL REWAFSSRLL FYSIIAVTSI TLPVLVIIMV LIRPHRNSQY FPYMCGIIAG  60
   61 NFVLLSTVFT LVVSENVNFV YSYLPGFMIC KFSAFLVNSA SCFIHWTWVG MYSQRFLHVF 120
  121 FPLRSRRRLP RSTWNTLLII LLISCTCQIW APITITELSF SPGNNSQGTY CAEDPYFSSS 180
  181 SKIIVLVEST ITFFIPFMLT VLADISVLVS KVPWQTPFKL ISADDLRNNN RSDNMKIVSK 240
  241 LNLESAEKRR INAIKRCLIS ATLTLVLNLP NYVLQVVDEF YSLREHGNIS IRRVFLQADA 300
  301 AVYILYLLQF PLVPVNMYFL RQNITRSSRK LREKTTLQQE HSKSFQVLEM SNDQSRIPLS 360
  361 TTIPSPMSHA

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.95
Transmembrane Helix	19	42	0.93
Cytoplasmic	43	49	0.92
Transmembrane Helix	50	73	0.91
Non-Cytoplasmic	74	88	0.84
Transmembrane Helix	89	112	0.85
Cytoplasmic	113	132	0.93
Transmembrane Helix	133	154	0.94
Non-Cytoplasmic	155	184	0.95
Transmembrane Helix	185	209	0.79
Cytoplasmic	210	256	0.92
Transmembrane Helix	257	274	0.79
Non-Cytoplasmic	275	299	0.78
Transmembrane Helix	300	320	0.84
Cytoplasmic	321	370	0.84