YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE42867
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVVIAGGG LVGSANACFF GQKGWIVDVY ESRFDPRGNH MENGKSINLA LGVRAMSTMK  60
   61 RIGLKEKVIH IGVPIRDQIA HFGDTKGKLK RLPVLNDDDF ILTINRQELS QILINEAEKY 120
  121 NNVKFHFNCK ATKFDLKSES LIVQNSDNLS TVDGDLFLAC DGAHSSIRRS LLKAPGFNFS 180
  181 QKYSEFGYID LSVNSTQQCD LKLGTHYSWR RRGIILVAIV NKDQSLTVSM FATFSEFESN 240
  241 LVGPVESVLF FKNNFYEIFK ILGEDHIRNT IARNKPQAII SVQCSQHVFF DKLVLMGDAA 300
  301 HAMVPFNGQG VNCGFEDCLV LQEIMDQYEE DELEDVIKEY SKVRTNETNI INQMEWDVNL 360
  361 TLTSSVHGSL GWIREIRAHI KLLLCFIFPS SFTLAAFSRE KYSEIARKAQ IVEKCTSLFT 420
  421 NVFIVFIISV ISLFWYCVLA VLWAN

Type	Start	End	Confidence
Signal Peptide	1	17	0.95
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	377	0.99
Transmembrane Helix	378	398	0.92
Cytoplasmic	399	417	0.92
Transmembrane Helix	418	439	0.95
Non-Cytoplasmic	440	445	0.68