YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dhs-20
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVCCLCTLF TWVLYFVAVV VVWNIVRYIL ELIPEGGSLQ DRAILITGCD TGFGRELAKK  60
   61 CAKNGFLVFA GCLTTEAAKT LESESANPRL RTVPLDVSKD ESVEKTVEFV KKSLGNHKLW 120
  121 GVVNNAGIFS CYGPDDWCRM NDYKLALDVN CLGVIRVTQA FKKLVKAAKG RIVTVTSVNG 180
  181 RLSTPAAGPY VVSKFGAAAY MDCIRQELYN FGVKVSILEP GIFRTPLLDE QAMLKRVDHV 240
  241 WTQIDDETRT EYGETFKNYF AKMWNKTYIS MSTTKIHYVV DNYYHALTAK YPRHRYYCGW 300
  301 DAIFVYVPLS LLPTWWADYV IRSLGKQEVV PACLEDSMKK KN

Type	Start	End	Confidence
Cytoplasmic	1	7	0.49
Transmembrane Helix	8	26	0.63
Non-Cytoplasmic	27	342	0.83