YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	98	0.97
Transmembrane Helix	99	122	0.85
Cytoplasmic	123	137	0.68
Transmembrane Helix	138	160	0.77
Non-Cytoplasmic	161	168	0.78
Transmembrane Helix	169	190	0.93
Cytoplasmic	191	201	0.82
Transmembrane Helix	202	221	0.90
Non-Cytoplasmic	222	229	0.76
Transmembrane Helix	230	249	0.91
Cytoplasmic	250	485	0.97
Transmembrane Helix	486	507	0.91
Non-Cytoplasmic	508	521	0.82
Transmembrane Helix	522	544	0.86
Cytoplasmic	545	556	0.80
Transmembrane Helix	557	578	0.86
Non-Cytoplasmic	579	594	0.79
Transmembrane Helix	595	616	0.92
Cytoplasmic	617	623	0.88
Transmembrane Helix	624	645	0.92
Non-Cytoplasmic	646	656	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSFHRRAAL TGADRKLRTQ IAILLLSGSL FFLIVLLPLV KNDVPADVSI ENEISKRHRR  60
   61 SVEYEFDDCR PRIQTTSNAN SSQFPADIFS LQTRRRGGVI VHIGLLIYMF VALAVVCDEF 120
  121 FVPSLSVITE VLAISDDVAG ATFMAAGGSA PEFFTSLFGV FVAQDNVGVG TIVGSATFNI 180
  181 LCVLAFCTLF SRQVLHLTWW PLFRDMSFYT LSLFLLLIFF GDEVIEWQEA LVMFSMYIAY 240
  241 GFFMKFNGFL ELKTKQFLFR KVGIGSEIAP ETIVDAAAGC TPRSPHSLGA QGPRRSFPMI 300
  301 HGGQEVRKSI AQLVIGDEDD TSSSSSSSSS ERSNKIKPVS NGVPEIRQNG RTIMVKPAND 360
  361 PDAKFNNQNS IKTVITPIDF GDDHTIVINN NNNGKRKNGN NGTYLTPVEA INPSNGHLEL 420
  421 AQTNGNPVPP IALDNLSIAS STAEKPLDLS WPEANHKKLI YLFLAPITFP LAYTLPDVRK 480
  481 PSLRKFFAIT FIGAILWIAA YSYLMVWWAN TIGETFGIPT EIMGLTILAA GTSIPDLITS 540
  541 VIVARKGLGD MAVSSSIGSN LFDVCVGLPI PWLIHFAIGV FKSEPTQNIS VTSNGLVCSL 600
  601 GLLFAMLIVL LTCVAISRWK MDKFFGLLMI FSYCGFCMLC ILLETGHLKC PLRNSC