YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-10
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSSFFLLI LCVFPIILGK NILIFNPIFG FSHVKFVSKL ADIIADHGHN VTVFQPFHIA  60
   61 LKNTEGLIKN KNIKFINYYP DHYDELLKTE TQTFPMFWDS HLMNNPVVSA VMMAKALSST 120
  121 FERTATQLVK DQNVLNNLKS KKFDVMISET FELTGMYVAH LINVPCIPIW SAVRFLVFNK 180
  181 AFGQPSTLGY IPLEGSKMAP DFGFFDRLND VYRDFFGQIG MDRLGQYQNN IIEKAVGHSV 240
  241 PYWKDLVSQS PIYITNSNPY LDFAVATTPA IVHIGGITID LEKIKHADEL PEEYEKILQE 300
  301 RESTVLISFG SVIRSYEMPD NFKAGLIKMF ESLPDVTFIW KYERDDVEFQ KRLPKNVHLK 360
  361 KWVPQPSLLA DKRVKLFVTH GGLGSTMEVA YTGKPALSVP IFGDQPENAD MLARHGGAIA 420
  421 YDKFDLANGE KLTKTVREMV TNPKFSKNAE ALRDVLLKQP IDPKMNLMKH LEFAMEFPNH 480
  481 RSQVPAINKL GWIAHYYLDV IAFLTLVVVG FLYLIFRFTK IVFVRIGILN KKAKTE

Type	Start	End	Confidence
Signal Peptide	1	19	0.91
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	492	0.96
Transmembrane Helix	493	516	0.91
Cytoplasmic	517	536	0.91