YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srbc-32
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIIITVVCL LGAVSSLVTI VLNGNLVWKI VLKKSKRNDD LQLFYYRFTM DICFSTCLLV  60
   61 YIIFVILTME VPHLFSNHRG LIVTLGLPWS NFATCRSAIA LAISLERLIA AYFPIRYRTA 120
  121 RNKIPNFSIF SMAVAFALSE ELVLFGFCSY SFDIPPNCRA FGCAVNQCFY NFWTAHRTII 180
  181 FAIILVSSIL LSVKLFVWNN SKGKQSSKHL SKTNRLALLN TCTVFIFDFV PSFFGTMWPT 240
  241 APMFNFDLVG PYNAVSKITG CAIDSFLVSR LLLKKDHGVA ASTVTTILQK VSRNSSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	28	0.91
Cytoplasmic	29	47	0.83
Transmembrane Helix	48	68	0.91
Non-Cytoplasmic	69	86	0.80
Transmembrane Helix	87	110	0.76
Cytoplasmic	111	125	0.83
Transmembrane Helix	126	147	0.89
Non-Cytoplasmic	148	177	0.92
Transmembrane Helix	178	198	0.95
Cytoplasmic	199	215	0.97
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	253	0.84
Transmembrane Helix	254	273	0.49
Cytoplasmic	274	297	0.56